Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006193.1 Corchorus olitorius cultivar O-4 contig06218, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 781

Length: 1303
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34


Found at i:94 original size:40 final size:39

Alignment explanation


    Indices: 32--116  Score: 116
    Period size: 40  Copynumber: 2.2  Consensus size: 39

         22 ACTTGACCCT

                                       *   *        
         32 CCTAATAATTAAGGAAACAAATTAAATTCAGGTTTAGCCC
          1 CCTAATAATTAAGGAAACAAATTAAATCCAGATTTAG-CC

                          *  *                   * 
         72 CCTAATAATTAAGGTAAGAAATTAAATCCAGATTTAGTC
          1 CCTAATAATTAAGGAAACAAATTAAATCCAGATTTAGCC

                  
        111 CCTAAT
          1 CCTAAT

        117 TATAAATATG


Statistics
Matches: 40,  Mismatches: 5, Indels: 1
        0.87            0.11        0.02

Matches are distributed among these distances:
  39    7  0.17
  40   33  0.82

ACGTcount: A:0.42, C:0.16, G:0.12, T:0.29


Consensus pattern (39 bp):   
CCTAATAATTAAGGAAACAAATTAAATCCAGATTTAGCC
Done.