Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006195.1 Corchorus olitorius cultivar O-4 contig06220, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1182
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34


Found at i:356 original size:25 final size:24

Alignment explanation


    Indices: 328--389  Score: 81
    Period size: 25  Copynumber: 2.6  Consensus size: 24

        318 GTGGATTGTA

                        *            
        328 AAATAAATTGAATAATTAAGACATT
          1 AAATAAATTGAAGAATTAA-ACATT

                     *              
        353 AAATAAATTTAAGAATTAAACATT
          1 AAATAAATTGAAGAATTAAACATT

                     *    
        377 AAA-AAATTCAAGA
          1 AAATAAATTGAAGA

        390 CTGACCCAAT


Statistics
Matches: 34,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  23    9  0.26
  24    8  0.24
  25   17  0.50

ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29


Consensus pattern (24 bp):   
AAATAAATTGAAGAATTAAACATT
Done.