Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006196.1 Corchorus olitorius cultivar O-4 contig06221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1190
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22


Found at i:808 original size:24 final size:21

Alignment explanation


    Indices: 759--807  Score: 80
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        749 TTCACCATGA

                                 
        759 CACCACCGGTTAAGCCCGTGC
          1 CACCACCGGTTAAGCCCGTGC

                        *        
        780 CACCACCGGTTATGCCCGTGC
          1 CACCACCGGTTAAGCCCGTGC

              *    
        801 CATCACC
          1 CACCACC

        808 ATTCCAAGCC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.18, C:0.45, G:0.20, T:0.16


Consensus pattern (21 bp):   
CACCACCGGTTAAGCCCGTGC
Done.