Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000620.1 Corchorus olitorius cultivar O-4 contig00620, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1588
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:1234 original size:2 final size:2

Alignment explanation


    Indices: 1227--1255  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       1217 TCATCAAAAC

                                                       
       1227 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1256 AGTCTAAACT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.