Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006202.1 Corchorus olitorius cultivar O-4 contig06227, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1853
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40


Found at i:853 original size:2 final size:2

Alignment explanation


    Indices: 846--881  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

        836 CTTTAACTAG

                                 *                               
        846 TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        882 CTAACAAATT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
TA

Done.