Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006206.1 Corchorus olitorius cultivar O-4 contig06231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1270
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39


Found at i:689 original size:22 final size:22

Alignment explanation


    Indices: 664--723  Score: 70
    Period size: 22  Copynumber: 2.7  Consensus size: 22

        654 TCACACTATA

                              *    
        664 AAATTTTGATAACCTTT-GTATG
          1 AAATTTTGATAACCTTTCCTA-G

                         *         
        686 AAATTTTGATAA-TTGTTCCTAG
          1 AAATTTTGATAACCT-TTCCTAG

                            
        708 AAATTTTGATAACCTT
          1 AAATTTTGATAACCTT

        724 AGTTTTCGGT


Statistics
Matches: 32,  Mismatches: 3, Indels: 6
        0.78            0.07        0.15

Matches are distributed among these distances:
  21    1  0.03
  22   28  0.88
  23    3  0.09

ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45


Consensus pattern (22 bp):   
AAATTTTGATAACCTTTCCTAG
Done.