Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006209.1 Corchorus olitorius cultivar O-4 contig06234, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1237
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.39


Found at i:467 original size:58 final size:58

Alignment explanation


    Indices: 371--485  Score: 178
    Period size: 58  Copynumber: 2.0  Consensus size: 58

        361 ATTAATCAAA

                                                          *           
        371 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTCGGACCGAGACT
          1 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCGAGACT

                *            *            *                           
        429 TATCGAGTGACATGTTTTTTTATTAGATGCCT-AAAAAAGACGTTTTAGGACCGAGAC
          1 TATCAAGTGACATG-TTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCGAGAC

        486 ATGATGCTAT


Statistics
Matches: 52,  Mismatches: 4, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  58   37  0.71
  59   15  0.29

ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Consensus pattern (58 bp):   
TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCGAGACT
Done.