Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006215.1 Corchorus olitorius cultivar O-4 contig06240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 605

Length: 1009
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27


Found at i:443 original size:16 final size:15

Alignment explanation


    Indices: 405--446  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        395 ACAGAAATTG

                   *   *   
        405 ACAGAAAGCAATTAA
          1 ACAGAAAACAACTAA

                           
        420 ACAGAAAACAACTAA
          1 ACAGAAAACAACTAA

                        
        435 ACTAGAAAACAA
          1 AC-AGAAAACAA

        447 AGCAGAGTAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  15   15  0.62
  16    9  0.38

ACGTcount: A:0.64, C:0.17, G:0.10, T:0.10


Consensus pattern (15 bp):   
ACAGAAAACAACTAA
Done.