Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006216.1 Corchorus olitorius cultivar O-4 contig06241, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 768

Length: 1280
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.29


Found at i:725 original size:15 final size:15

Alignment explanation


    Indices: 705--742  Score: 67
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        695 ACAGAGATTG

                           
        705 ACAGAAAGCAATTAA
          1 ACAGAAAGCAATTAA

                           
        720 ACAGAAAGCAATTAA
          1 ACAGAAAGCAATTAA

                    
        735 ACTAGAAA
          1 AC-AGAAA

        743 ACAAAACAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.77
  16    5  0.23

ACGTcount: A:0.61, C:0.13, G:0.13, T:0.13


Consensus pattern (15 bp):   
ACAGAAAGCAATTAA
Done.