Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006224.1 Corchorus olitorius cultivar O-4 contig06249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1865
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28


Found at i:1378 original size:13 final size:14

Alignment explanation


    Indices: 1349--1378  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       1339 TATCTTTTTA

                          
       1349 ATTTTCCTTGCATT
          1 ATTTTCCTTGCATT

                          
       1363 ATTTTCCTTG-ATT
          1 ATTTTCCTTGCATT

               
       1376 ATT
          1 ATT

       1379 GCTTTGATTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.38
  14   10  0.62

ACGTcount: A:0.17, C:0.17, G:0.07, T:0.60


Consensus pattern (14 bp):   
ATTTTCCTTGCATT
Done.