Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006233.1 Corchorus olitorius cultivar O-4 contig06258, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 818

Length: 1364
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.44


Found at i:685 original size:15 final size:15

Alignment explanation


    Indices: 665--703  Score: 69
    Period size: 15  Copynumber: 2.6  Consensus size: 15

        655 TCTATTGGTA

                           
        665 TATATATTTTGGACC
          1 TATATATTTTGGACC

                           
        680 TATATATTTTGGACC
          1 TATATATTTTGGACC

               *     
        695 TATTTATTT
          1 TATATATTT

        704 AAGCATATGG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.26, C:0.10, G:0.10, T:0.54


Consensus pattern (15 bp):   
TATATATTTTGGACC

Done.