Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006238.1 Corchorus olitorius cultivar O-4 contig06263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 987

Length: 1645
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34


Found at i:1227 original size:21 final size:21

Alignment explanation


    Indices: 1202--1253  Score: 61
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       1192 AAATTAACCA

                                  
       1202 TTAATAAGGTTACCAAA-ATGC
          1 TTAATAAGGTTACCAAAGA-GC

                    *    *       
       1223 TTAATAAGCTTACTAAAGAGC
          1 TTAATAAGGTTACCAAAGAGC

             *        
       1244 TAAATAAGGT
          1 TTAATAAGGT

       1254 CATTTATGAA


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  21   25  0.96
  22    1  0.04

ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29


Consensus pattern (21 bp):   
TTAATAAGGTTACCAAAGAGC
Done.