Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006239.1 Corchorus olitorius cultivar O-4 contig06264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1513
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28


Found at i:1240 original size:16 final size:16

Alignment explanation


    Indices: 1221--1254  Score: 59
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1211 AAGCTCTACA

                        *   
       1221 AAGCAGAAAAGCTCTG
          1 AAGCAGAAAAGCCCTG

                            
       1237 AAGCAGAAAAGCCCTG
          1 AAGCAGAAAAGCCCTG

              
       1253 AA
          1 AA

       1255 AAATCAAGAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.47, C:0.21, G:0.24, T:0.09


Consensus pattern (16 bp):   
AAGCAGAAAAGCCCTG
Done.