Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006240.1 Corchorus olitorius cultivar O-4 contig06265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.39


Found at i:157 original size:21 final size:21

Alignment explanation


    Indices: 131--171  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        121 TTGATTTGTT

                                 
        131 TTTTGGATTAATCTTATTTTG
          1 TTTTGGATTAATCTTATTTTG

                                
        152 TTTTGGATTAATCTTATTTT
          1 TTTTGGATTAATCTTATTTT

        172 CCCCAATTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.20, C:0.05, G:0.12, T:0.63


Consensus pattern (21 bp):   
TTTTGGATTAATCTTATTTTG

Found at i:543 original size:18 final size:18

Alignment explanation


    Indices: 520--558  Score: 60
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        510 AAAGGGTAAT

                     *        
        520 TAAAAAAAATTGTTTTCA
          1 TAAAAAAAAGTGTTTTCA

                  *           
        538 TAAAAAGAAGTGTTTTCA
          1 TAAAAAAAAGTGTTTTCA

               
        556 TAA
          1 TAA

        559 TAAAGGAGAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36


Consensus pattern (18 bp):   
TAAAAAAAAGTGTTTTCA
Done.