Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006245.1 Corchorus olitorius cultivar O-4 contig06270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 803

Length: 1339
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37


Found at i:753 original size:21 final size:20

Alignment explanation


    Indices: 727--767  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        717 AAAACCACTT

                           *     
        727 TTTTTTTTTCGTTTCTTGACA
          1 TTTTTTTTT-GTTTCATGACA

                                
        748 TTTTTTTTTGTTTCATGACA
          1 TTTTTTTTTGTTTCATGACA

        768 GTTGACACCA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20   10  0.53
  21    9  0.47

ACGTcount: A:0.12, C:0.12, G:0.10, T:0.66


Consensus pattern (20 bp):   
TTTTTTTTTGTTTCATGACA
Done.