Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006255.1 Corchorus olitorius cultivar O-4 contig06280, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 957

Length: 1595
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33


Found at i:967 original size:10 final size:10

Alignment explanation


    Indices: 952--978  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

        942 ATCCGAGCCT

                      
        952 CATGCCCAGC
          1 CATGCCCAGC

                      
        962 CATGCCCAGC
          1 CATGCCCAGC

                   
        972 CATGCCC
          1 CATGCCC

        979 GGCAGCATAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.19, C:0.52, G:0.19, T:0.11


Consensus pattern (10 bp):   
CATGCCCAGC

Found at i:1200 original size:20 final size:21

Alignment explanation


    Indices: 1175--1213  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1165 CGACCGGCCA

                                 
       1175 TATA-CCGTGCCACCACCGGT
          1 TATACCCGTGCCACCACCGGT

                         *     
       1195 TATACCCGTGCCATCACCG
          1 TATACCCGTGCCACCACCG

       1214 TTGATGATTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    4  0.24
  21   13  0.76

ACGTcount: A:0.21, C:0.41, G:0.18, T:0.21


Consensus pattern (21 bp):   
TATACCCGTGCCACCACCGGT

Done.