Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006261.1 Corchorus olitorius cultivar O-4 contig06286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2222
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34


Found at i:1881 original size:2 final size:2

Alignment explanation


    Indices: 1874--1914  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       1864 TTAGTCTCTA

                                                                         
       1874 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1915 CTAGTTAAAG


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.