Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006273.1 Corchorus olitorius cultivar O-4 contig06298, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 816

Length: 1361
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32


Found at i:383 original size:34 final size:32

Alignment explanation


    Indices: 309--455  Score: 118
    Period size: 33  Copynumber: 4.4  Consensus size: 32

        299 GCTATGATCA

                                        ** * 
        309 ACCAAAACAGA-TTTGTTTTCATCACAATTAGC
          1 ACCAAAACAGATTTTG-TTTCATCACAAACAAC

                                              
        341 ATCCAAAACAGAATTTTGTTTCATCACAAACAAC
          1 A-CCAAAACAG-ATTTTGTTTCATCACAAACAAC

                           *  *              
        375 ACCTAAAACAGATTTAGTGTCATCACAAACAAC
          1 ACC-AAAACAGATTTTGTTTCATCACAAACAAC

                   **  *   *         *        
        408 ACTCAAATTAGGTTTAGTATT-ATCGCAAACAAC
          1 AC-CAAAACAGATTTTGT-TTCATCACAAACAAC

               *           
        441 ATCTAAAACAGATTT
          1 A-CCAAAACAGATTT

        456 AAGAATTACT


Statistics
Matches: 94,  Mismatches: 14, Indels: 13
        0.78            0.12        0.11

Matches are distributed among these distances:
  32    1  0.01
  33   64  0.68
  34   25  0.27
  35    4  0.04

ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28


Consensus pattern (32 bp):   
ACCAAAACAGATTTTGTTTCATCACAAACAAC

Done.