Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006274.1 Corchorus olitorius cultivar O-4 contig06299, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 860

Length: 1434
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32


Found at i:740 original size:48 final size:49

Alignment explanation


    Indices: 681--774  Score: 154
    Period size: 48  Copynumber: 1.9  Consensus size: 49

        671 GGGACTTAGT

                                                             
        681 TTTTTCATGTGATTATTAAGTGATCAATTACTTAATGAAAAAGATTCGA
          1 TTTTTCATGTGATTATTAAGTGATCAATTACTTAATGAAAAAGATTCGA

                                      *  *   *            
        730 TTTTT-ATGTGATTATTAAGTGATCAGTTGCTTGATGAAAAAGATT
          1 TTTTTCATGTGATTATTAAGTGATCAATTACTTAATGAAAAAGATT

        775 AGACAGTTAT


Statistics
Matches: 42,  Mismatches: 3, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  48   37  0.88
  49    5  0.12

ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43


Consensus pattern (49 bp):   
TTTTTCATGTGATTATTAAGTGATCAATTACTTAATGAAAAAGATTCGA
Done.