Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006276.1 Corchorus olitorius cultivar O-4 contig06301, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1486
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35


Found at i:1362 original size:10 final size:10

Alignment explanation


    Indices: 1347--1382  Score: 54
    Period size: 11  Copynumber: 3.4  Consensus size: 10

       1337 AAGAAAAATA

                       
       1347 TTTTTTTATTT
          1 TTTTTTTA-TT

                       
       1358 TTTTTATTATT
          1 TTTTT-TTATT

                      
       1369 TTTTTTTATT
          1 TTTTTTTATT

                
       1379 TTTT
          1 TTTT

       1383 GAATTTAAAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  10    9  0.38
  11   12  0.50
  12    3  0.12

ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89


Consensus pattern (10 bp):   
TTTTTTTATT

Found at i:1370 original size:20 final size:20

Alignment explanation


    Indices: 1345--1382  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1335 TTAAGAAAAA

                                 
       1345 TATTTTTTTATT-TTTTTTAT
          1 TATTTTTTT-TTATTTTTTAT

                              
       1365 TATTTTTTTTTATTTTTT
          1 TATTTTTTTTTATTTTTT

       1383 GAATTTAAAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  19    2  0.12
  20   15  0.88

ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87


Consensus pattern (20 bp):   
TATTTTTTTTTATTTTTTAT
Done.