Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006277.1 Corchorus olitorius cultivar O-4 contig06302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1051
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28


Found at i:880 original size:96 final size:96

Alignment explanation


    Indices: 714--905  Score: 309
    Period size: 96  Copynumber: 2.0  Consensus size: 96

        704 AGGGAGAGGG

                                                                             
        714 GATGATGCGCCAAGGACTCATCATTGGCTTGAGGAGCACAATGGAGATCATGACAAGGATGTGCA
          1 GATGATGCGCCAAGGACTCATCATTGGCTTGAGGAGCACAATGGAGATCATGACAAGGATGTGCA

                  *                        
        779 CATGCGGCAAGGAGGCTTGGAGAAGCTTGAA
         66 CATGCGACAAGGAGGCTTGGAGAAGCTTGAA

                                                                     *       
        810 GATGATGCGCCAAGGACTCATCA-TGGTCTTGAAGG-GCACAATGGAGATCATGGA-GAGGATGT
          1 GATGATGCGCCAAGGACTCATCATTGG-CTTG-AGGAGCACAATGGAGATCAT-GACAAGGATGT

               *                              
        872 GCATATGCGACAAGGAGGCTTGGAGAAGCTTGAA
         63 GCACATGCGACAAGGAGGCTTGGAGAAGCTTGAA

        906 AATGCTAAAG


Statistics
Matches: 90,  Mismatches: 3, Indels: 6
        0.91            0.03        0.06

Matches are distributed among these distances:
  95    3  0.03
  96   82  0.91
  97    5  0.06

ACGTcount: A:0.30, C:0.17, G:0.34, T:0.19


Consensus pattern (96 bp):   
GATGATGCGCCAAGGACTCATCATTGGCTTGAGGAGCACAATGGAGATCATGACAAGGATGTGCA
CATGCGACAAGGAGGCTTGGAGAAGCTTGAA
Done.