Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006281.1 Corchorus olitorius cultivar O-4 contig06306, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1143
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32


Found at i:448 original size:10 final size:9

Alignment explanation


    Indices: 432--458  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

        422 GGAGTAATGA

                     
        432 ATTTTTTTT
          1 ATTTTTTTT

                     
        441 ATTTTTTTT
          1 ATTTTTTTT

                     
        450 ATTTTTTTT
          1 ATTTTTTTT

        459 GAGAAATTCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89


Consensus pattern (9 bp):   
ATTTTTTTT
Done.