Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006284.1 Corchorus olitorius cultivar O-4 contig06309, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 686

Length: 1144
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.34


Found at i:512 original size:48 final size:52

Alignment explanation


    Indices: 436--537  Score: 158
    Period size: 48  Copynumber: 2.0  Consensus size: 52

        426 CCTATGTCAC

                                                                
        436 TTTCATTTGGGCCTTTTCCTTTTATTTTTGGCTAAATGGGTCAAC-T-TCCT
          1 TTTCATTTGGGCCTTTTCCTTTTATTTTTGGCTAAATGGGTCAACATGTCCT

                             *     *                            
        486 TTTC-TTTGGG-CTTTTTCTTTTCTTTTTGGCTAAATGGGTCAACATGTCCT
          1 TTTCATTTGGGCCTTTTCCTTTTATTTTTGGCTAAATGGGTCAACATGTCCT

              
        536 TT
          1 TT

        538 GGTTTCGGGC


Statistics
Matches: 48,  Mismatches: 2, Indels: 4
        0.89            0.04        0.07

Matches are distributed among these distances:
  48   31  0.65
  49    7  0.15
  50   10  0.21

ACGTcount: A:0.13, C:0.19, G:0.17, T:0.52


Consensus pattern (52 bp):   
TTTCATTTGGGCCTTTTCCTTTTATTTTTGGCTAAATGGGTCAACATGTCCT
Done.