Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006292.1 Corchorus olitorius cultivar O-4 contig06317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7080
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28


Found at i:7049 original size:29 final size:31

Alignment explanation


    Indices: 7017--7077  Score: 90
    Period size: 29  Copynumber: 2.0  Consensus size: 31

       7007 ACGCAATTTG

                     *                     
       7017 GGATATAACGTTAC-AAAA-CAAGCAATTAA
          1 GGATATAACATTACAAAAAGCAAGCAATTAA

                                 *         
       7046 GGATATAACATTACAAAAAGCGAGCAATTAA
          1 GGATATAACATTACAAAAAGCAAGCAATTAA

             
       7077 G
          1 G

       7078 TAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  29   13  0.46
  30    4  0.14
  31   11  0.39

ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20


Consensus pattern (31 bp):   
GGATATAACATTACAAAAAGCAAGCAATTAA

Done.