Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006307.1 Corchorus olitorius cultivar O-4 contig06332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1138
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28


Found at i:335 original size:21 final size:21

Alignment explanation


    Indices: 296--335  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        286 AGGAGATGCC

                        *        
        296 AAAGATGCCATTTGATCCATT
          1 AAAGATGCCATTAGATCCATT

                          *    
        317 AAAGATGCCATTAGGTCCA
          1 AAAGATGCCATTAGATCCA

        336 AAGACAAGAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28


Consensus pattern (21 bp):   
AAAGATGCCATTAGATCCATT
Done.