Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006317.1 Corchorus olitorius cultivar O-4 contig06342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1147
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35


Found at i:423 original size:8 final size:8

Alignment explanation


    Indices: 410--437  Score: 56
    Period size: 8  Copynumber: 3.5  Consensus size: 8

        400 TTTATTTCCA

                    
        410 TTTTCATT
          1 TTTTCATT

                    
        418 TTTTCATT
          1 TTTTCATT

                    
        426 TTTTCATT
          1 TTTTCATT

                
        434 TTTT
          1 TTTT

        438 TTCCATTACT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   20  1.00

ACGTcount: A:0.11, C:0.11, G:0.00, T:0.79


Consensus pattern (8 bp):   
TTTTCATT
Done.