Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000632.1 Corchorus olitorius cultivar O-4 contig00632, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29


Found at i:367 original size:33 final size:33

Alignment explanation


    Indices: 295--379  Score: 89
    Period size: 33  Copynumber: 2.6  Consensus size: 33

        285 CTATGTCCAT

                     **              * *    *
        295 GCCGCCCTCGGTGGGCGGCATGGACTTGGCCAT
          1 GCCGCCCTCCTTGGGCGGCATGGACATAGCCAC

             *                     *         
        328 GGCGCCCTCCTTGGGCGGCATGGTCATAGCCAC
          1 GCCGCCCTCCTTGGGCGGCATGGACATAGCCAC

                    *  *       
        361 GCCGCCCTGCTAGGGCGGC
          1 GCCGCCCTCCTTGGGCGGC

        380 GCCGACCAAA


Statistics
Matches: 42,  Mismatches: 10, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  33   42  1.00

ACGTcount: A:0.09, C:0.36, G:0.38, T:0.16


Consensus pattern (33 bp):   
GCCGCCCTCCTTGGGCGGCATGGACATAGCCAC
Done.