Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006320.1 Corchorus olitorius cultivar O-4 contig06345, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1232
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:567 original size:13 final size:13

Alignment explanation


    Indices: 549--573  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        539 AGCTTAGGGG

                         
        549 TATTTTTTTATTT
          1 TATTTTTTTATTT

                        
        562 TATTTTTTTATT
          1 TATTTTTTTATT

        574 GGGTCAGACC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84


Consensus pattern (13 bp):   
TATTTTTTTATTT
Done.