Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006321.1 Corchorus olitorius cultivar O-4 contig06346, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1323
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30


Found at i:724 original size:113 final size:111

Alignment explanation


    Indices: 521--769  Score: 306
    Period size: 113  Copynumber: 2.2  Consensus size: 111

        511 ATCAATTAGT

                         *         *       *                                 
        521 AATACAAATTGGGGAAAAATGAATACTAAAATATAGCGGCGTTTTGGCCTTAAACGCCACTAAAT
          1 AATACAAATTGGGTAAAAATGAAGACTAAAAAATAGCGGCGTTTT-G-CTTAAACGCCACTAAAT

            *         *                *        *            
        586 TGGGGCGTTTGAGGTTAAAAACGCCGTCATATTTAATTTTTATCCGGGA
         64 GGGGGCGTTTAAGGTTAAAAACGCCGTAATATTTAAATTTT-TCCGGGA

               *                              *                        *     
        635 AATGCAAATTGGGTAAAAATG-AGACTAAAAAATTGCGGCGTTTCT-CTTCAAAACGCCGCTAAA
          1 AATACAAATTGGGTAAAAATGAAGACTAAAAAATAGCGGCGTTT-TGCTT--AAACGCCACTAAA

                             * *                        *    
        698 TGGGGGCGTTTAAGGTTTACAACGCCGTAATATTTAAATTTTTCTGGGA
         63 TGGGGGCGTTTAAGGTTAAAAACGCCGTAATATTTAAATTTTTCCGGGA

                                    
        747 AATACAAATTGGGT-AAAATGAAG
          1 AATACAAATTGGGTAAAAATGAAG

        770 GTTCGTACCC


Statistics
Matches: 117,  Mismatches: 14, Indels: 10
        0.83            0.10        0.07

Matches are distributed among these distances:
 111    9  0.08
 112   21  0.18
 113   67  0.57
 114   20  0.17

ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29


Consensus pattern (111 bp):   
AATACAAATTGGGTAAAAATGAAGACTAAAAAATAGCGGCGTTTTGCTTAAACGCCACTAAATGG
GGGCGTTTAAGGTTAAAAACGCCGTAATATTTAAATTTTTCCGGGA
Done.