Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006328.1 Corchorus olitorius cultivar O-4 contig06353, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6280
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:5120 original size:25 final size:25

Alignment explanation


    Indices: 5075--5122  Score: 62
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       5065 TTTTGAACTC

                        *            
       5075 ATTATTTATTATTTAAAATATATTT
          1 ATTATTTATTATATAAAATATATTT

                             *      
       5100 ATTATTTATT-TAATAATATATAT
          1 ATTATTTATTAT-ATAAAATATAT

       5123 CATATCTAAG


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  24    1  0.05
  25   19  0.95

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (25 bp):   
ATTATTTATTATATAAAATATATTT
Done.