Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006340.1 Corchorus olitorius cultivar O-4 contig06365, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3279
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:457 original size:75 final size:75

Alignment explanation


    Indices: 355--506  Score: 232
    Period size: 75  Copynumber: 2.0  Consensus size: 75

        345 TGGATTCAAT

                 *    *                                     *  *        * *  
        355 CACCTTGAAATCATTGCTTTGACTAAAACTGATTTTGAAACATCTTTTGATTAAAACTCATCTTT
          1 CACCTCGAAACCATTGCTTTGACTAAAACTGATTTTGAAACATCTTTTAATCAAAACTCACCATT

                      
        420 CCTTTGCTCA
         66 CCTTTGCTCA

                                  *       *                                  
        430 CACCTCGAAACCATTGCTTTGATTAAAACTTATTTTGAAACATCTTTTAATCAAAACTCACCATT
          1 CACCTCGAAACCATTGCTTTGACTAAAACTGATTTTGAAACATCTTTTAATCAAAACTCACCATT

                      
        495 CCTTTGCTCA
         66 CCTTTGCTCA

              
        505 CA
          1 CA

        507 GTCCAGATAA


Statistics
Matches: 69,  Mismatches: 8, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  75   69  1.00

ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38


Consensus pattern (75 bp):   
CACCTCGAAACCATTGCTTTGACTAAAACTGATTTTGAAACATCTTTTAATCAAAACTCACCATT
CCTTTGCTCA
Done.