Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006344.1 Corchorus olitorius cultivar O-4 contig06369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1401
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:55 original size:35 final size:35

Alignment explanation


    Indices: 4--138  Score: 121
    Period size: 35  Copynumber: 3.6  Consensus size: 35

          1 TTT

                *                              
          4 TTTTTAAATTGGGAAAGTTCCCACCAGTTTTTAAG
          1 TTTTCAAATTGGGAAAGTTCCCACCAGTTTTTAAG

                                    **               
         39 TTTTCAAATTGGGAAAGTTCCCATTTAGTTTTTTTTCAAAG
          1 TTTTCAAATTGGGAAAGTTCCCA-CCAG---TTTTT--AAG

                 *                                
         80 ATTTTTAAATCTGGGAAAGTTCCCACCAAG-TTTT-AG
          1 -TTTTCAAAT-TGGGAAAGTTCCCACC-AGTTTTTAAG

                   *               
        116 TTTTCAATTTAGGGAAAGTTCCC
          1 TTTTCAAATT-GGGAAAGTTCCC

        139 GTCATATTGA


Statistics
Matches: 82,  Mismatches: 8, Indels: 20
        0.75            0.07        0.18

Matches are distributed among these distances:
  34    1  0.01
  35   41  0.50
  36    4  0.05
  39    9  0.11
  41    3  0.04
  42    8  0.10
  43   16  0.20

ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41


Consensus pattern (35 bp):   
TTTTCAAATTGGGAAAGTTCCCACCAGTTTTTAAG
Done.