Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006350.1 Corchorus olitorius cultivar O-4 contig06375, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36


Found at i:624 original size:21 final size:21

Alignment explanation


    Indices: 588--631  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        578 ATTTTCTCAT

                      **    *    
        588 TAAAGGTTATTGAGAAGATTA
          1 TAAAGGTTATCAAGAACATTA

                                 
        609 TAAAGGTTATCAAGAACATTA
          1 TAAAGGTTATCAAGAACATTA

              
        630 TA
          1 TA

        632 CTATTATCAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32


Consensus pattern (21 bp):   
TAAAGGTTATCAAGAACATTA
Done.