Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006351.1 Corchorus olitorius cultivar O-4 contig06376, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1758
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:1327 original size:15 final size:16

Alignment explanation


    Indices: 1309--1342  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1299 TGAAAGAATG

                            
       1309 CAATTAAAC-AGAAAA
          1 CAATTAAACTAGAAAA

                  *         
       1324 CAATTATACTAGAAAA
          1 CAATTAAACTAGAAAA

               
       1340 CAA
          1 CAA

       1343 AACAAACAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    8  0.47
  16    9  0.53

ACGTcount: A:0.62, C:0.15, G:0.06, T:0.18


Consensus pattern (16 bp):   
CAATTAAACTAGAAAA

Done.