Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006355.1 Corchorus olitorius cultivar O-4 contig06380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2211
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32


Found at i:189 original size:72 final size:72

Alignment explanation


    Indices: 72--213  Score: 275
    Period size: 72  Copynumber: 2.0  Consensus size: 72

         62 AAGGGAAGAT

                                                                             
         72 AGTTAATTTCATTCATCCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA
          1 AGTTAATTTCATTCATCCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA

                   
        137 GCACAAC
         66 GCACAAC

                            *                                                
        144 AGTTAATTTCATTCATTCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA
          1 AGTTAATTTCATTCATCCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA

                 
        209 GCACA
         66 GCACA

        214 GCAAAAACAA


Statistics
Matches: 69,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  72   69  1.00

ACGTcount: A:0.32, C:0.23, G:0.10, T:0.36


Consensus pattern (72 bp):   
AGTTAATTTCATTCATCCATCGATTCTTATTCTTATTAGTCAAAGACTTAACCATGACATGCTCA
GCACAAC
Done.