Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006359.1 Corchorus olitorius cultivar O-4 contig06384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 725

Length: 1209
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:523 original size:12 final size:12

Alignment explanation


    Indices: 506--536  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        496 TTAAATCGCG

                        
        506 GTCGCGGCCCCT
          1 GTCGCGGCCCCT

                        
        518 GTCGCGGCCCCT
          1 GTCGCGGCCCCT

                   
        530 GTCGCGG
          1 GTCGCGG

        537 ACGCGGTTGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.00, C:0.45, G:0.39, T:0.16


Consensus pattern (12 bp):   
GTCGCGGCCCCT

Found at i:557 original size:14 final size:15

Alignment explanation


    Indices: 538--570  Score: 59
    Period size: 14  Copynumber: 2.3  Consensus size: 15

        528 CTGTCGCGGA

                           
        538 CGCGGTTGC-GGTGT
          1 CGCGGTTGCGGGTGT

                           
        552 CGCGGTTGCGGGTGT
          1 CGCGGTTGCGGGTGT

                
        567 CGCG
          1 CGCG

        571 AACGTTACAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  14    9  0.50
  15    9  0.50

ACGTcount: A:0.00, C:0.24, G:0.52, T:0.24


Consensus pattern (15 bp):   
CGCGGTTGCGGGTGT

Done.