Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006371.1 Corchorus olitorius cultivar O-4 contig06396, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1177
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.39


Found at i:641 original size:36 final size:36

Alignment explanation


    Indices: 594--663  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        584 TTCAATAACC

                        **      *               
        594 TTACATCTTTTGTGATTTTGGTTATCATATTTCTTA
          1 TTACATCTTTTGAAATTTTGATTATCATATTTCTTA

                  *                           
        630 TTACATTTTTTGAAATTTTGATTATCATATTTCT
          1 TTACATCTTTTGAAATTTTGATTATCATATTTCT

        664 CTAAAATCTC


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.23, C:0.10, G:0.09, T:0.59


Consensus pattern (36 bp):   
TTACATCTTTTGAAATTTTGATTATCATATTTCTTA
Done.