Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006382.1 Corchorus olitorius cultivar O-4 contig06407, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1291
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.41


Found at i:63 original size:39 final size:40

Alignment explanation


    Indices: 7--87  Score: 119
    Period size: 39  Copynumber: 2.0  Consensus size: 40

          1 ATTCCT

                                          *  *      
          7 ATGTAATATATATAATAACTAAAATACTTAGATTAATTAA
          1 ATGTAATATATATAATAACTAAAATACTTACATGAATTAA

                     *          *                   
         47 ATGTAATA-CTATAATAACTGAAATACTTACATGAATTAA
          1 ATGTAATATATATAATAACTAAAATACTTACATGAATTAA

              
         86 AT
          1 AT

         88 TCTTAGGTAT


Statistics
Matches: 37,  Mismatches: 4, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  39   29  0.78
  40    8  0.22

ACGTcount: A:0.51, C:0.07, G:0.06, T:0.36


Consensus pattern (40 bp):   
ATGTAATATATATAATAACTAAAATACTTACATGAATTAA
Done.