Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006383.1 Corchorus olitorius cultivar O-4 contig06408, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8176
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:7489 original size:16 final size:16

Alignment explanation


    Indices: 7468--7501  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       7458 ATATTAATTA

                             
       7468 ATCTATATCTATAT-CT
          1 ATCTATA-CTATATACT

                            
       7484 ATCTATACTATATACT
          1 ATCTATACTATATACT

              
       7500 AT
          1 AT

       7502 ATATTAAAAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    6  0.35
  16   11  0.65

ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47


Consensus pattern (16 bp):   
ATCTATACTATATACT

Found at i:7628 original size:13 final size:13

Alignment explanation


    Indices: 7601--7637  Score: 51
    Period size: 13  Copynumber: 3.0  Consensus size: 13

       7591 TTATTAGGAT

                         
       7601 TTATTTATA--TA
          1 TTATTTATATTTA

                         
       7612 TTATTTATATTTA
          1 TTATTTATATTTA

                   *     
       7625 TTATTTACATTTA
          1 TTATTTATATTTA

       7638 ACATATCTTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  11    9  0.39
  13   14  0.61

ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65


Consensus pattern (13 bp):   
TTATTTATATTTA
Done.