Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006387.1 Corchorus olitorius cultivar O-4 contig06412, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1146
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Found at i:961 original size:13 final size:13

Alignment explanation


    Indices: 931--971  Score: 52
    Period size: 13  Copynumber: 3.4  Consensus size: 13

        921 CCCGTTGAGG

                         
        931 AAATG-TTT-TAT
          1 AAATGCTTTATAT

              *          
        942 AACTGCTTTATAT
          1 AAATGCTTTATAT

                         
        955 AAATGCTTTATA-
          1 AAATGCTTTATAT

                 
        967 AAATG
          1 AAATG

        972 TTTTGGGTGC


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  11    4  0.15
  12    8  0.31
  13   14  0.54

ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44


Consensus pattern (13 bp):   
AAATGCTTTATAT
Done.