Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006402.1 Corchorus olitorius cultivar O-4 contig06427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1508
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:857 original size:31 final size:32

Alignment explanation


    Indices: 803--866  Score: 85
    Period size: 31  Copynumber: 2.0  Consensus size: 32

        793 GTAAAAAAGA

                       *   *  *      *      
        803 ATTGGAATGCCCAAATTATCCTCAATGCTTAT
          1 ATTGGAATGCCAAAAATACCCTCAAGGCTTAT

                                            
        835 ATTGG-ATGCCAAAAATACCCTCAAGGCTTAT
          1 ATTGGAATGCCAAAAATACCCTCAAGGCTTAT

             
        866 A
          1 A

        867 CGAAATAACA


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  31   23  0.82
  32    5  0.18

ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30


Consensus pattern (32 bp):   
ATTGGAATGCCAAAAATACCCTCAAGGCTTAT
Done.