Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006405.1 Corchorus olitorius cultivar O-4 contig06430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 833

Length: 1389
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.37


Found at i:676 original size:2 final size:2

Alignment explanation


    Indices: 628--657  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        618 CATAATACTA

                         *                              
        628 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        658 CTTATCTTAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT
Done.