Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006408.1 Corchorus olitorius cultivar O-4 contig06433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 890

Length: 1484
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:1151 original size:18 final size:18

Alignment explanation


    Indices: 1123--1157  Score: 54
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1113 TGTTTAAATA

                               
       1123 AATTGAAAATTAAATTAAT
          1 AATTGAAAATT-AATTAAT

                             
       1142 AATT-AAAATTAATTAA
          1 AATTGAAAATTAATTAA

       1158 CACCGTATAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    6  0.38
  18    6  0.38
  19    4  0.25

ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37


Consensus pattern (18 bp):   
AATTGAAAATTAATTAAT
Done.