Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01006415.1 Corchorus olitorius cultivar O-4 contig06440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1707

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
225--284
30
2.1
28
81
12
68
41
6
5
46
1.52
231--396
86
1.9
86
92
2
280
33
12
6
48
1.65
460--503
20
2.1
21
88
12
65
31
6
11
50
1.65
479--528
23
2.2
23
85
7
66
24
6
12
58
1.56
798--839
22
1.9
22
85
9
59
30
16
7
45
1.74
913--956
20
2.1
21
88
12
65
31
6
11
50
1.65
1103--1156
21
2.6
21
96
0
99
37
24
3
35
1.73
1277--1333
22
2.6
22
77
5
62
35
8
10
45
1.70
1358--1431
21
3.5
21
81
7
80
32
8
5
54
1.53
1358--1453
21
4.6
21
75
12
63
28
9
7
55
1.58
1358--1502
63
2.3
63
80
11
161
28
8
10
52
1.65
1618--1667
21
2.4
20
83
6
64
30
12
14
44
1.81

Tables:   1

The End!