Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006420.1 Corchorus olitorius cultivar O-4 contig06445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37


Found at i:814 original size:17 final size:17

Alignment explanation


    Indices: 777--824  Score: 60
    Period size: 17  Copynumber: 2.8  Consensus size: 17

        767 GTAATCTTTG

                 *         **
        777 ATCACCGGTGATCTTGC
          1 ATCACTGGTGATCTTAA

                             
        794 ATCACTGGTGATCTTAA
          1 ATCACTGGTGATCTTAA

                  *       
        811 ATCACTAGTGATCT
          1 ATCACTGGTGATCT

        825 GGGGGGTGAT


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  17   27  1.00

ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33


Consensus pattern (17 bp):   
ATCACTGGTGATCTTAA
Done.