Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006421.1 Corchorus olitorius cultivar O-4 contig06446, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:473 original size:56 final size:57

Alignment explanation


    Indices: 402--524  Score: 176
    Period size: 57  Copynumber: 2.2  Consensus size: 57

        392 CTGAGGCATT

                      *                   *              *           
        402 TCGCCTGGGCGCCCAGCGACAATCGGG-CTTTGCTCTAGCTGGGGTCTGGATGCCTG
          1 TCGCCTGGGCACCCAGCGACAATCGGGTCTCTGCTCTAGCTGGGGCCTGGATGCCTG

                              *  *               *            *      
        458 TCGCCTGGGCACCCAGCGGCAGTCGGGTCTCTGCTCTGGCTGGGGCCTGGGTGCCTG
          1 TCGCCTGGGCACCCAGCGACAATCGGGTCTCTGCTCTAGCTGGGGCCTGGATGCCTG

                      
        515 TCGCCTGGGC
          1 TCGCCTGGGC

        525 GTTTGGGCGT


Statistics
Matches: 59,  Mismatches: 7, Indels: 1
        0.88            0.10        0.01

Matches are distributed among these distances:
  56   24  0.41
  57   35  0.59

ACGTcount: A:0.07, C:0.33, G:0.38, T:0.22


Consensus pattern (57 bp):   
TCGCCTGGGCACCCAGCGACAATCGGGTCTCTGCTCTAGCTGGGGCCTGGATGCCTG

Done.