Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006426.1 Corchorus olitorius cultivar O-4 contig06451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1371
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43


Found at i:1056 original size:25 final size:24

Alignment explanation


    Indices: 1024--1071  Score: 69
    Period size: 25  Copynumber: 2.0  Consensus size: 24

       1014 TTGAATTTTT

                      *             
       1024 ATGTTTAATTCTTAAATTTATTTA
          1 ATGTTTAATTATTAAATTTATTTA

                          *         
       1048 ATGTCTTAATTATTCAATTTATTT
          1 ATGT-TTAATTATTAAATTTATTT

       1072 TACAATCCAC


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  24    4  0.19
  25   17  0.81

ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58


Consensus pattern (24 bp):   
ATGTTTAATTATTAAATTTATTTA
Done.