Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006427.1 Corchorus olitorius cultivar O-4 contig06452, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27


Found at i:21 original size:15 final size:16

Alignment explanation


    Indices: 1--33  Score: 59
    Period size: 16  Copynumber: 2.1  Consensus size: 16

                            
          1 AATTAAAC-AGAAAAC
          1 AATTAAACTAGAAAAC

                            
         16 AATTAAACTAGAAAAC
          1 AATTAAACTAGAAAAC

              
         32 AA
          1 AA

         34 AGCAAAGTAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    8  0.47
  16    9  0.53

ACGTcount: A:0.67, C:0.12, G:0.06, T:0.15


Consensus pattern (16 bp):   
AATTAAACTAGAAAAC

Done.