Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006442.1 Corchorus olitorius cultivar O-4 contig06467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3556
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36


Found at i:597 original size:2 final size:2

Alignment explanation


    Indices: 592--616  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

        582 ATATATATAT

                                                 
        592 AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG A

        617 TTGAGATGAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (2 bp):   
AG

Done.