Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006443.1 Corchorus olitorius cultivar O-4 contig06468, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 764

Length: 1274
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34


Found at i:1113 original size:20 final size:20

Alignment explanation


    Indices: 1086--1132  Score: 60
    Period size: 20  Copynumber: 2.4  Consensus size: 20

       1076 GATCCTACAG

                         *  *   
       1086 ATGC-AAATGTGAGATTAAT
          1 ATGCAAAATGTGACATAAAT

                     *          
       1105 ATGCAAAATTTGACATAAAT
          1 ATGCAAAATGTGACATAAAT

                    
       1125 ATGCAAAA
          1 ATGCAAAA

       1133 GAACACAACA


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  19    4  0.17
  20   20  0.83

ACGTcount: A:0.49, C:0.09, G:0.15, T:0.28


Consensus pattern (20 bp):   
ATGCAAAATGTGACATAAAT
Done.